RNA2D Web Interface

• EDscan and SigED: The two programs are used to search for well-ordered folding segments (WFS) in a genomic sequence.
• SigStb and SegFold: The two programs are used to search for unusual folding regions (UFR) in RNAs.

Using the four programs we intend to discover local RNA elements with potentially structure-dependent functions, and to correlate them with known experimental properties and to suggest candidate sites for further experimental study.

• EFFold: It is used to predict a set of RNA secondary structures that are nearly as good by simulated energy rules and dynamic programming algorithm.
• RNAGA: It employed a genetic algorithm to predict common secondary structures from a set of homologous RNA sequences without the need for their pre-aligned multiple sequences.
• HomoStRscan: The program takes a single RNA sequence with its secondary structure to search for homologous RNAs in complete genomes.

---

• Program SigED
• Program EDscan
• Program SigStb
• Program SegFold
• Program EFFold
• Program RNAGA
• Program HomoStRscan
• References

---

RNA2D Server for Online Users

---

Back to RNA Folding and Modeling at CCRNP

Back to CCRNP Research Projects

Back to S.Y. Le's Home Page

Back to CCRNP

Please send questions or suggestions to shuyun@ncifcrf.gov
January 16, 2003