The script file for execution of SegFold includes following steps:
Put all input files in the same path (or directory) before running the job Make correct links between I/O units and the corresponding I/O files. It includes input sequence (segfold.seq) and controling file (segfold.in) and all files of energy table used in programs. The input files include ene.tbl, ene2.tbl, std.tbl, std2.tbl, turner.tbl, tinoco.tbl, cf20, cf30, cf50, cf100 and cf150. For each block input SegFold produced three output files. They are segfold_d.sig, segfold_d.stbl and segfold_d.sigstbl for using Turner energy rules, and segfold_t.sig, segfold_t.stbl and segfold_t.sigstbl for using Tinoco energy rules. Execute the job on /usr/tmp/~users if you have big files. Return Outputs in the correct path.